TIDE

Response Prediction Query Gene Regulator Prioritization Biomarker Evaluation Download FAQ Contact News
{{ nickname }} Logout
Check for newest update information (Update on 20200918)

TIDE:   Tumor Immune Dysfunction and Exclusion

The module can perform the comparison between the custom biomarker and other published biomarkers based on their predictive power of response outcome and overall survival.

Tutorial video of biomarker evaluation

Download the video

README

  1. Input genes that you are interested.(Using comma to seprate genes. eg. PD1, CTLA4) or upload a gene file.
  2. This function will use the average/weighted(if a gene file was uploaded ) expression of the custom geneset as a new biomarker.
  3. Comparing the new biomarker with existed biomarkers, showing bar plots.
  4. You can download interested plots by clicking the button.
  5. By clicking each point in the survival plot, you can view the corresponding Kaplan Meier plot on the top.
Geneset Example File
gene,weight
SERPINB9,-1
TGFB1,-1
PDL1,1
FAP,-1
VEGFA,-1
IFNG,1
ANGPT2,-1
Dowload

{{loadingMessage}}

{{Math.ceil(process.percent)}}%

Input Genes: {{geneset.value}}

  

OR

  

Choose File:  {{geneset.name}}

Only support format:  {{geneset.fileErorr}}

Input Error
  • {{msg}}
    • Running successfully:
    • Input:  {{result_msg.value}}

      • Warning

    • {{warn}}
    • Click to start new running.

    Dana Farber Cancer Institute & Harvard University © 2018-2020

    Contact us
    /
    Infomation